Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11696656 chr20:47223697 C/T 0 500 31.5 32.07 6.78 KM Plot
THCA rs11696900 chr20:47336967 C/A 6.22E-9 496 31.6 32.5 18.22 KM Plot
THCA rs11697155 chr20:47248485 T/C 0 503 31.47 33.1 6.78 KM Plot
THCA rs11698365 chr20:47259527 C/T 0 499 31.6 32.1 6.78 KM Plot
THCA rs11698574 chr20:47247649 A/G 0 502 31.47 32.93 7.77 KM Plot
THCA rs11699175 chr20:47248471 G/C 0 503 31.47 33.1 6.78 KM Plot
THCA rs11699318 chr20:47215819 C/T 3.81E-9 494 31.53 32.52 7.77 KM Plot
THCA rs11699725 chr20:47246181 A/C 0 503 31.47 32.93 7.77 KM Plot
THCA rs11700125 chr20:47227925 C/T 0 503 31.6 32.1 6.78 KM Plot
THCA rs117060836 chr18:13824115 C/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs117069221 chr14:23560315 T/C 5.44E-15 498 31.7 31.93 12.97 KM Plot
THCA rs11714234 chr3:53903169 G/A 3.04E-7 494 31.67 31.77 24.75 KM Plot
THCA rs117153304 chr16:79267820 C/T 6.76E-13 478 31.7 31 19.35 KM Plot
THCA rs117189599 chr16:79276369 A/G 5.77E-12 495 31.5 31.67 19.35 KM Plot
THCA rs11734405 chr4:146081096 C/T 2.07E-7 503 33.7 24.17 16.8 KM Plot